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TU Berlin

Inhalt des Dokuments

Analysis of Neural Data

Journal Publications


Koren, V., Andrei, A., Hu, M., Dragoi, V. and Obermayer, K. (2019). Reading-out task variables as a low-dimensional reconstruction of parallel spike trains in single trials. PLoS ONE, 14(10), 24.

Onken, A., Dragoi, V. and Obermayer, K. (2012). A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts. PLoS Computational Biology, 8

Onken, A., Grünewälder, S., Munk, M. and Obermayer, K. (2009). Analyzing Short-Term Noise Dependencies of Spike-Counts in Macaque Prefrontal Cortex Using Copulas and the Flashlight Transformation. PLoS Comput. Biol., 5, e1000577.


Balta Beylergila, S., Beck, A., Deserno, L., Lorenz, R., Rapp, M., Schlagenhauf, F., Heinz, A. and Obermayer, K. (2017). Dorsolateral prefrontal cortex contributes to the impaired behavioral adaptation in alcohol dependence. Neuroimage: Clinical, 15, 80–94.

Pielot, R., Scholz, M., Obermayer, K., Scheich, H., Gundelfinger, E. and Hess, A. (2003). A New Point-Based Warping Method for Enhanced and Simplified Analysis of Functional Brain Image Data. Neuroimage, 19, 1716 – 1729.

Puls, I., Mohr, J., Wrase, J., Vollstaedt-Klein, S., Lemenager, T., Vollmert, C., Rapp, M., Obermayer, K., Heinz, A. and Smolka, M. (2009). A Model Comparison of COMT Effects on Central Processing of Affective Stimuli. Neuroimage, 46, 683 – 691.

Schmitt, S., Evers, J.-F., Duch, C., Scholz, M. and Obermayer, K. (2004). New Methods for the Computer-Assisted 3D Reconstruction of Neurons from Confocal Image Stacks. Neuroimage, 23, 1283 – 1298.

Stetter, M., Greve, H., Galizia, C. and Obermayer, K. (2001). Analysis of Calcium Imaging Signals from the Honeybee Brain by Nonlinear Models. Neuroimage, 13, 119 – 128.

Stetter, M., Schießl, I., Otto, T., Sengpiel, F., Hübener, M., Bonhoeffer, T. and Obermayer, K. (2000). Principal Component Analysis and Blind Separation of Sources for Optical Imaging of Intrinsic Signals. Neuroimage, 11, 482 – 490.

Tobia, M. J., Guo, R., Schwarze, U., Böhmer, W., Gläscher, J., Finckh, B., Marschner, A., Büchel, C., Obermayer, K. and Sommer, T. (2014). Counterfactual Q-learning in a Strategic Sequential Investment Task: Serotonergic and Dopaminergic Involvement in the Medial Prefrontal Cortex and Striatum. Neuroimage

Müller, T., Stetter, M., Hübener, M., Gödecke, I., Chapman, B., Löwel, S., Sengpiel, F., Bonhoeffer, T. and Obermayer, K. (2000). An Analysis of Orientation and Ocular Dominance Patterns in the Visual Cortex of Cats and Ferrets. Neural Computation, 12, 2573 – 2596.

Kanev, J., Koutsou, A., Christodoulou, C. and Obermayer, K. (2016). Integrator or Coincidence Detector - a Novel Measure Based on the Discrete Reverse Correlation to Determine a Neuron's Operational Mode. Neural Computation, 28, 1-38.

Vollgraf, R., Munk, M. and Obermayer, K. (2005). Spike Sorting of Multi-Site Electrode Recordings. Network - Computation in Neural Systems, 16, 85 – 113.


Stetter, M. and Obermayer, K. (1999). Simulation of Scanning Laser Techniques for Optical Imaging of Blood-Related Intrinsic Signals. Journal of the Optical Society of America, 16, 58 – 70.

Bucher, D., Scholz, M., Stetter, M., Obermayer, K. and Pflüger, H.-J. (2000). Corrections Methods for Three-dimensional Reconstructions from Confocal Images: I. Tissue Shrinking and Axial Scaling. Journal of Neuroscience Methods, 100, 135 – 143.

Franke, F., Pröpper, R., Alle, H., Meier, P., Geiger, J. R. P., Obermayer, K. and Munk, M. H. J. (2015). Spike sorting of synchronous spikes from local neuron ensembles. Journal of Neurophysiology, 114, 2535–2549.

Dima, A., Scholz, M. and Obermayer, K. (2003). Automatic 3D-Graph Construction of Nerve Cells from Confocal Microscopy Scans. Journal of Electronic Imaging, 12, 134 – 150.

Franke, F., Natora, M., Boucsein, C., Munk, M. and Obermayer, K. (2010). An Online Spike Detection and Spike Classification Algorithm Capable of Instantaneous Resolution of Overlapping Spikes. Journal of Computional Neuroscience, 127 – 148.

Franke, F., Quiroga, R. Q., Hierlemann, A. and Obermayer, K. (2015). Bayes optimal template matching for spike sorting – combining fisher discriminant analysis with optimal filtering. Journal of Computational Neuroscience, 38, 439-459.

Hiesinger, P., Scholz, M., Meinertzhagen, I., Fischbach, K.-F. and Obermayer, K. (2001). Visualization of Synaptic Markers in the Optic Neuropils of Drosophila Using a New Constrained Deconvolution Method. Journal of Comparative Neurology, 429, 277 – 288.

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