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TU Berlin

Inhalt des Dokuments

Analysis of Neural Data

Journal Publications

B

Balta Beylergila, S., Beck, A., Deserno, L., Lorenz, R., Rapp, M., Schlagenhauf, F., Heinz, A. and Obermayer, K. (2017). Dorsolateral prefrontal cortex contributes to the impaired behavioral adaptation in alcohol dependence. Neuroimage: Clinical, 15, 80–94.


Bucher, D., Scholz, M., Stetter, M., Obermayer, K. and Pflüger, H.-J. (2000). Corrections Methods for Three-dimensional Reconstructions from Confocal Images: I. Tissue Shrinking and Axial Scaling. Journal of Neuroscience Methods, 100, 135 – 143.


D

Dima, A., Scholz, M. and Obermayer, K. (2003). Automatic Segmentation and Skeletonization of Neurons from Confocal Microscopy Images Based on the 3-D Wavelet Transform. IEEE TRANSACTIONS ON IMAGE PROCESSING, 11, 790-801.


Dima, A., Scholz, M. and Obermayer, K. (2003). Automatic 3D-Graph Construction of Nerve Cells from Confocal Microscopy Scans. Journal of Electronic Imaging, 12, 134 – 150.


Dima, A., Scholz, M. and Obermayer, K. (2002). Automatic Segmentation and Skeletonization of Neurons from Confocal Microscopy Images based on the 3D Wavelet Transform. IEEE Trans. on Image Proc., 11, 790 – 801.


F

Franke, F., Natora, M., Boucsein, C., Munk, M. and Obermayer, K. (2010). An Online Spike Detection and Spike Classification Algorithm Capable of Instantaneous Resolution of Overlapping Spikes. Journal of Computional Neuroscience, 127 – 148.


Franke, F., Pröpper, R., Alle, H., Meier, P., Geiger, J. R. P., Obermayer, K. and Munk, M. H. J. (2015). Spike sorting of synchronous spikes from local neuron ensembles. Journal of Neurophysiology, 114, 2535–2549.


Franke, F., Quiroga, R. Q., Hierlemann, A. and Obermayer, K. (2015). Bayes optimal template matching for spike sorting – combining fisher discriminant analysis with optimal filtering. Journal of Computational Neuroscience, 38, 439-459.


H

Hiesinger, P., Scholz, M., Meinertzhagen, I., Fischbach, K.-F. and Obermayer, K. (2001). Visualization of Synaptic Markers in the Optic Neuropils of Drosophila Using a New Constrained Deconvolution Method. Journal of Comparative Neurology, 429, 277 – 288.


Huys, Q., Deserno, L., Obermayer, K., Schlagenhauf, F. and Heinz, A. (2016). Model-free temporal-difference learning and dopamine in alcohol dependence: examining concepts from theory and animals in human imaging. Biological Psychiatry: Cognitive Neuroscience and Neuroimaging, 1, 401 - 410.


K

Kanev, J., Koutsou, A., Christodoulou, C. and Obermayer, K. (2016). Integrator or Coincidence Detector - a Novel Measure Based on the Discrete Reverse Correlation to Determine a Neuron's Operational Mode. Neural Computation, 28, 1-38.


Koren, V., Andrei, A., Hu, M., Dragoi, V. and Obermayer, K. (2019). Reading-out task variables as a low-dimensional reconstruction of parallel spike trains in single trials. PLoS ONE, 14(10), 24.


M

Meyer, R. and Obermayer, K. (2016). pypet: A Python Toolkit for Data Management of Parameter Explorations. Frontiers Neuroinformatics, 10


Mohr, J., Seyfarth, J., Lueschow, A., Weber, J. E., Wichman, F. A. and Obermayer, K. (2016). BOiS - Berlin Object in Scene Database: Controlled Photographic Images for Visual Search Experiments with Quantified Contextual Priors. Frontiers in Psychology, 7


Mohr, J., Hess, A., Scholz, M. and Obermayer, K. (2004). A Method for the Automatic Segmentation Autoradiographic Image Stacks and Spatial Normalization of Functional Cortical Activity Data. J. Neurosci. Methods, 134, 45 – 58.


Müller, T., Stetter, M., Hübener, M., Gödecke, I., Chapman, B., Löwel, S., Sengpiel, F., Bonhoeffer, T. and Obermayer, K. (2000). An Analysis of Orientation and Ocular Dominance Patterns in the Visual Cortex of Cats and Ferrets. Neural Computation, 12, 2573 – 2596.


N

Natora, M. and Obermayer, K. (2011). An Unsupervised and Drift-adaptive Spike Detection Algorithm Based on Hybrid Blind Beamforming. EURASIP J. Adv. Signal Processing 2011, 2011


O

Onken, A., Dragoi, V. and Obermayer, K. (2012). A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts. PLoS Computational Biology, 8


Onken, A., Grünewälder, S., Munk, M. and Obermayer, K. (2009). Analyzing Short-Term Noise Dependencies of Spike-Counts in Macaque Prefrontal Cortex Using Copulas and the Flashlight Transformation. PLoS Comput. Biol., 5, e1000577.


P

Pielot, R., Scholz, M., Obermayer, K., Scheich, H., Gundelfinger, E. and Hess, A. (2003). A New Point-Based Warping Method for Enhanced and Simplified Analysis of Functional Brain Image Data. Neuroimage, 19, 1716 – 1729.


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